STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS10679.1Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
AMS10680.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.950
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.880
AMS10681.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
AMS10684.1
Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.776
AMS10683.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.775
AMS10682.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.770
AMS10685.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.770
dnaE
DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.769
AMS10686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.721
AMS10687.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.718
Your Current Organism:
Erysipelothrix rhusiopathiae
NCBI taxonomy Id: 1648
Other names: ATCC 19414, Bacillus insidiosus, Bacillus rhusiopathiae suis, Bacterium rhusiopathiae, CCUG 221, CIP 105957, DSM 5055, E. rhusiopathiae, Erysipelothrix erysipeloides, Erysipelothrix insidiosa, Erysipelothrix murisepticus, Erysipelothrix porci, NCTC 8163
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.