STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS10796.1Glucuronyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
AMS10798.1
PTS N-acetylgalactosamine transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.912
agaV
PTS N-acetylgalactosamine transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.903
AMS10800.1
Oligohyaluronate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.884
idnO
Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.879
agaD
PTS N-acetylgalactosamine transporter subunit IID; Catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.879
HylB
Hyaluronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.751
HylA
Hyaluronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.742
HylC
Hyaluronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.728
eda
2-dehydro-3-deoxyphosphogluconate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.675
rpiB2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.594
Your Current Organism:
Erysipelothrix rhusiopathiae
NCBI taxonomy Id: 1648
Other names: ATCC 19414, Bacillus insidiosus, Bacillus rhusiopathiae suis, Bacterium rhusiopathiae, CCUG 221, CIP 105957, DSM 5055, E. rhusiopathiae, Erysipelothrix erysipeloides, Erysipelothrix insidiosa, Erysipelothrix murisepticus, Erysipelothrix porci, NCTC 8163
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