STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ41024.1Hypothetical protein. (467 aa)    
Predicted Functional Partners:
AKQ41025.1
Hypothetical protein.
    
0.983
AKQ43053.2
Di-tripeptide ABC transporter-like protein.
 
    0.877
AKQ41014.1
Hypothetical protein.
  
     0.596
AKQ41173.2
Hypothetical protein.
       0.570
AKQ42524.1
TolB protein precursor.
  
     0.563
AKQ42387.1
Peptidase, M28 family protein.
  
     0.542
AKQ43024.2
Hypothetical protein.
  
     0.534
AKQ41023.1
Transcriptional regulator, GntR family protein.
       0.524
AKQ41928.1
Hypothetical protein.
  
  
 0.493
ANC50472.1
Peptidase, M20/M25/M40 family.
  
     0.467
Your Current Organism:
Erythrobacter atlanticus
NCBI taxonomy Id: 1648404
Other names: E. atlanticus, Erythrobacter atlanticus Zhuang et al. 2015, Erythrobacter sp. s21-N3, KCTC 42697, MCCC 1A00519, strain s21-N3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.