STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrrKPutative Holliday junction resolvase. (141 aa)    
Predicted Functional Partners:
SCG98963.1
Uncharacterized protein conserved in bacteria.
 
    0.910
SCH94770.1
Uncharacterized protein conserved in bacteria.
  
    0.630
alaS_1
Alanine--tRNA ligase.
  
    0.617
miaA
tRNA dimethylallyltransferase.
  
    0.523
alaS_2
Alanine--tRNA ligase.
  
    0.457
SCH04374.1
Putative TrmH family tRNA/rRNA methyltransferase.
  
    0.442
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.