STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrFOrotidine 5'-phosphate decarboxylase. (232 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase.
 
 0.998
pyrDB
Dihydroorotate dehydrogenase B (NAD(+))%2C catalytic subunit.
 
 
 0.996
pyrK
Dihydrdoorotate oxidase B%2C electron transfer subunit.
 
 
 0.992
pyrC
Dihydroorotase.
 
 
 0.988
pyrB
Aspartate carbamoyltransferase catalytic chain.
  
 
 0.971
carB
Carbamoyl-phosphate synthase large chain.
  
  
 0.947
carA
Carbamoyl-phosphate synthase small chain.
  
  
 0.941
uraA
Uracil transporter.
  
  
 0.924
pyrI
Aspartate carbamoyltransferase regulatory chain.
  
 
  0.839
upp
Uracil phosphoribosyltransferase.
  
 
 0.830
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.