STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiAN-acetylmuramoyl-L-alanine amidase AmiA precursor. (243 aa)    
Predicted Functional Partners:
cwlC
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.815
SCH61958.1
Zinc D-Ala-D-Ala carboxypeptidase precursor.
    
 0.760
SCH73811.1
Murein tetrapeptide carboxypeptidase.
  
  
 0.756
SCH60432.1
Predicted outer membrane protein.
   
 
  0.694
atl
Bifunctional autolysin precursor.
  
 
 0.693
SCH54794.1
Uncharacterized protein with a bacterial SH3 domain homologue.
  
 
 0.693
murAA_1
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1.
  
   
 0.502
alaS_2
Alanine--tRNA ligase.
  
    0.501
murAA_2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1.
  
   
 0.436
SCG91135.1
H-34.
 
 
 0.424
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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