STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbDBeta-hexosaminidase. (383 aa)    
Predicted Functional Partners:
SCH73811.1
Murein tetrapeptide carboxypeptidase.
  
  
 0.684
pbpE_2
Penicillin-binding protein E.
 
 
 0.593
pbpE_1
Penicillin-binding protein E.
 
 
 0.588
SCH07485.1
1-phosphatidylinositol phosphodiesterase precursor.
  
  
 0.536
SCG99759.1
Domain of uncharacterised function (DUF3794).
     
 0.498
bioY
Biotin ECF transporter S component BioY.
       0.453
ykfC
Gamma-D-glutamyl-L-lysine endopeptidase.
 
  
  0.429
rho
Transcription termination factor Rho.
  
  
 0.414
pksJ
Polyketide synthase PksJ.
 
  
 0.400
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.