STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobBNAD-dependent deacetylase. (241 aa)    
Predicted Functional Partners:
gdh
NAD-specific glutamate dehydrogenase.
   
 0.967
atpD
ATP synthase subunit beta.
    
 0.842
nadD
Nicotinate-nucleotide adenylyltransferase.
  
 
 0.840
ppnK
Probable inorganic polyphosphate/ATP-NAD kinase.
   
 
 0.816
nadE
Probable NH(3)-dependent NAD(+) synthetase.
    
 0.785
deoD
Purine nucleoside phosphorylase deoD-type.
    
 0.782
nudC
NADH pyrophosphatase.
    
  0.770
SCH58886.1
Regulator of competence-specific genes.
    
   0.762
pksJ
Polyketide synthase PksJ.
  
 0.759
ycaC
Putative hydrolase.
  
 0.722
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.