STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplT50S ribosomal protein L20. (117 aa)    
Predicted Functional Partners:
rplM
50S ribosomal protein L13.
 
 
 0.999
rpmI
50S ribosomal protein L35.
  
 
 0.999
rplN
50S ribosomal protein L14.
   
 
 0.998
rpsC
BS2.
  
 
 0.998
rplV
50S ribosomal protein L22.
  
 
 0.998
rpsS
BS17.
   
 
 0.998
rplB
L3.
   
 
 0.998
rplD
50S ribosomal protein L4.
  
 
 0.998
rpsJ
BS13.
   
 
 0.998
rplL
MA1/MA2.
  
 
 0.998
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.