STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCH91054.1Tropinesterase. (225 aa)    
Predicted Functional Partners:
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
 
 0.996
tycC
Tyrocidine synthase III.
 
 0.994
pksJ
Polyketide synthase PksJ.
  
 0.972
srfAA_2
Surfactin synthase subunit 1.
  
 0.937
SCH05276.1
Acyl-CoA dehydrogenase%2C short-chain specific.
  
 0.888
rpsL
30S ribosomal protein S12.
   
 
 0.857
lpd
Dihydrolipoyl dehydrogenase.
   
 0.855
rpsN1
BS-A.
     
 0.845
gmk
Guanylate kinase.
    
  0.844
pheA
P-protein.
     
 0.843
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.