STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate--pyruvate transaminase. (363 aa)    
Predicted Functional Partners:
tdcB
L-threonine dehydratase catabolic TdcB.
  
 0.789
metH_1
Methionine synthase.
   
 
  0.734
glyA
Pyridoxal-phosphate-dependent serine hydroxymethyltransferase.
  
 0.694
lpd
Dihydrolipoyl dehydrogenase.
   
 
 0.688
trpC
Tryptophan biosynthesis protein TrpCF.
    
  0.662
SCH14838.1
Putative 2-hydroxyacid dehydrogenase HI_1556.
  
 
 0.653
serA
D-3-phosphoglycerate dehydrogenase.
  
 
 0.653
cysE
Serine acetyltransferase.
     
 0.644
trpA
Tryptophan synthase alpha chain.
   
 
  0.643
trpB
Tryptophan synthase beta chain.
    
  0.639
Your Current Organism:
uncultured Eubacterium sp.
NCBI taxonomy Id: 165185
Other names: u. Eubacterium sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.