Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cpnA | polA | SAMEA3545320_00761 | SAMEA3545320_01329 | Cyclopentanol dehydrogenase. | DNA polymerase I. | 0.536 |
cpnA | sbcD | SAMEA3545320_00761 | SAMEA3545320_00019 | Cyclopentanol dehydrogenase. | Nuclease sbcCD subunit D. | 0.808 |
fabG_1 | polA | SAMEA3545320_00093 | SAMEA3545320_01329 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | DNA polymerase I. | 0.536 |
fabG_1 | sbcD | SAMEA3545320_00093 | SAMEA3545320_00019 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | Nuclease sbcCD subunit D. | 0.808 |
fabG_3 | polA | SAMEA3545320_01072 | SAMEA3545320_01329 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | DNA polymerase I. | 0.536 |
fabG_3 | sbcD | SAMEA3545320_01072 | SAMEA3545320_00019 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | Nuclease sbcCD subunit D. | 0.808 |
lvr | polA | SAMEA3545320_00828 | SAMEA3545320_01329 | Levodione reductase. | DNA polymerase I. | 0.536 |
lvr | sbcD | SAMEA3545320_00828 | SAMEA3545320_00019 | Levodione reductase. | Nuclease sbcCD subunit D. | 0.808 |
nfo | polA | SAMEA3545320_00018 | SAMEA3545320_01329 | Probable endonuclease 4. | DNA polymerase I. | 0.477 |
nfo | sbcC | SAMEA3545320_00018 | SAMEA3545320_00020 | Probable endonuclease 4. | Nuclease sbcCD subunit C. | 0.777 |
nfo | sbcD | SAMEA3545320_00018 | SAMEA3545320_00019 | Probable endonuclease 4. | Nuclease sbcCD subunit D. | 0.777 |
polA | cpnA | SAMEA3545320_01329 | SAMEA3545320_00761 | DNA polymerase I. | Cyclopentanol dehydrogenase. | 0.536 |
polA | fabG_1 | SAMEA3545320_01329 | SAMEA3545320_00093 | DNA polymerase I. | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | 0.536 |
polA | fabG_3 | SAMEA3545320_01329 | SAMEA3545320_01072 | DNA polymerase I. | 3-oxoacyl-[acyl-carrier-protein] reductase FabG. | 0.536 |
polA | lvr | SAMEA3545320_01329 | SAMEA3545320_00828 | DNA polymerase I. | Levodione reductase. | 0.536 |
polA | nfo | SAMEA3545320_01329 | SAMEA3545320_00018 | DNA polymerase I. | Probable endonuclease 4. | 0.477 |
polA | prdA_2 | SAMEA3545320_01329 | SAMEA3545320_02133 | DNA polymerase I. | D-proline reductase proprotein prdA. | 0.959 |
polA | recA | SAMEA3545320_01329 | SAMEA3545320_01015 | DNA polymerase I. | Recombinase A. | 0.997 |
polA | recQ | SAMEA3545320_01329 | SAMEA3545320_02381 | DNA polymerase I. | ATP-dependent DNA helicase recQ. | 0.985 |
polA | sbcC | SAMEA3545320_01329 | SAMEA3545320_00020 | DNA polymerase I. | Nuclease sbcCD subunit C. | 0.981 |
page 1 of 3