STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCH40123.1Zn-ribbon-containing%2C possibly RNA-binding protein and truncated derivatives. (302 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III subunit beta.
 
   
 0.884
recF
DNA replication and repair protein recF.
  
  
 0.830
SCH40215.1
Uncharacterized conserved protein.
       0.811
SCH40076.1
Uncharacterised protein.
       0.803
SCH26823.1
Uncharacterized protein involved in outer membrane biogenesis.
  
     0.771
SCH52343.1
Organic solvent tolerance protein OstA.
  
     0.771
SCH42325.1
Outer membrane protein.
  
     0.770
SCH87211.1
DNA polymerase III subunit delta.
  
   
 0.770
SCH26571.1
Outer membrane protein.
  
     0.767
SCH33379.1
Uncharacterised protein.
  
     0.765
Your Current Organism:
uncultured Megasphaera sp.
NCBI taxonomy Id: 165188
Other names: u. Megasphaera sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.