STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspALipoprotein signal peptidase. (144 aa)    
Predicted Functional Partners:
rluD_2
Ribosomal large subunit pseudouridine synthase D.
  
    0.830
pyrR
Bifunctional protein pyrR.
  
    0.745
lgt
Prolipoprotein diacylglyceryl transferase.
 
   
 0.589
ileS
Isoleucine--tRNA ligase.
  
  
 0.562
pheT
Phenylalanine--tRNA ligase beta subunit.
 
    0.496
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
  
 0.494
fruA
EIIABC-Fru.
     
 0.479
bcrC
Undecaprenyl-diphosphatase BcrC.
  
 
 0.455
ftsW
Cell division protein FtsW.
 
  
 0.438
murC
UDP-N-acetylmuramate--L-alanine ligase.
 
  
 0.436
Your Current Organism:
uncultured Megasphaera sp.
NCBI taxonomy Id: 165188
Other names: u. Megasphaera sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.