STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI01364.1Conjugal transfer protein TrbF. (252 aa)    
Predicted Functional Partners:
virB9
Conjugal transfer protein TrbG.
 
  
 0.976
SCI01438.1
Type IV secretion system protein virB10.
 
  
 0.975
traG
Conjugal transfer protein traG.
 
     0.952
ptlH
Pertussis toxin liberation protein H.
 
  
 0.912
virB4
Type IV secretion system protein virB4.
 
 
 0.912
SCH61170.1
Conjugal transfer protein TrbL.
 
  
 0.895
mobA_1
DNA strand transferase.
 
     0.803
SCH61096.1
Conjugal transfer peptidase TraF.
 
     0.780
SCI01581.1
Type IV secretory pathway%2C VirB3-like protein.
    
 0.710
traC
DNA primase TraC.
 
    0.658
Your Current Organism:
uncultured Megasphaera sp.
NCBI taxonomy Id: 165188
Other names: u. Megasphaera sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.