STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001754075_01883Unannotated protein. (688 aa)    
Predicted Functional Partners:
GCA_001754075_01884
Unannotated protein.
 0.980
GCA_001754075_01882
Unannotated protein.
 
  
 0.916
GCA_001754075_00995
Unannotated protein.
 
 0.914
GCA_001754075_00993
Unannotated protein.
 
 0.909
GCA_001754075_01886
Unannotated protein.
  
    0.842
GCA_001754075_01880
Unannotated protein.
  
    0.834
GCA_001754075_01881
Unannotated protein.
  
    0.834
GCA_001754075_01887
Unannotated protein.
       0.831
GCA_001754075_01885
Unannotated protein.
  
  
 0.818
GCA_001754075_01486
Unannotated protein.
 
 
 0.742
Your Current Organism:
Merdimonas faecis
NCBI taxonomy Id: 1653435
Other names: Clostridium sp. BR31, JCM 30748, KCTC 15482, M. faecis, Merdimonas faecis Seo et al. 2017, strain BR31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.