STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THC_0650ABC transporter. (285 aa)    
Predicted Functional Partners:
THC_0649
ABC transporter.
 
  
 0.978
THC_0017
Hypothetical protein.
0.911
THC_1467
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
      0.903
THC_0697
Hypothetical protein.
 
    
 0.901
THC_0698
Hypothetical protein.
 
 
  
 0.896
THC_1822
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
    
0.866
THC_0648
Cadmium transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
    0.776
THC_0680
Cobalt ABC transporter ATPase.
 
   
0.684
atpD
ATP F0F1 synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.655
atpD-2
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.655
Your Current Organism:
Caldimicrobium thiodismutans
NCBI taxonomy Id: 1653476
Other names: C. thiodismutans, Caldimicrobium thiodismutans Kojima et al. 2016, DSM 29380, NBRC 110713, Thermodesulfobacteriaceae bacterium TF1, strain TF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.