STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THC_0882Fis family transcriptional regulator. (458 aa)    
Predicted Functional Partners:
THC_1717
Hypothetical protein.
 
  0.935
THC_0881
Integral membrane sensor signal transduction histidine kinase.
   0.912
THC_0372
Fis family transcriptional regulator.
  
  
 
0.905
THC_0548
RNA polymerase, sigma 54 subunit, RpoN.
 
  
 0.627
THC_1316
Hypothetical protein.
 
 
 0.621
THC_0557
ATPase.
  
 
 0.616
THC_1328
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.594
THC_1498
Hypothetical protein.
 
 
   0.570
THC_1372
Histidine kinase.
 
 
   0.569
THC_0780
Hypothetical protein.
 
 
0.532
Your Current Organism:
Caldimicrobium thiodismutans
NCBI taxonomy Id: 1653476
Other names: C. thiodismutans, Caldimicrobium thiodismutans Kojima et al. 2016, DSM 29380, NBRC 110713, Thermodesulfobacteriaceae bacterium TF1, strain TF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.