STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THC_1373Hypothetical protein. (455 aa)    
Predicted Functional Partners:
THC_1497
Chemotaxis protein CheY.
  
  
 
0.909
THC_0005
Acetoacetate metabolism regulatory protein AtoC.
  
  
 
0.906
THC_1372
Histidine kinase.
 
   0.853
THC_1371
Phosphonate ABC transporter substrate-binding protein.
  
    0.775
gpsA
Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.773
THC_1370
Hypothetical protein.
       0.773
THC_0548
RNA polymerase, sigma 54 subunit, RpoN.
 
  
 0.710
THC_0557
ATPase.
  
 
 0.616
THC_1328
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.522
THC_0780
Hypothetical protein.
 
 
0.516
Your Current Organism:
Caldimicrobium thiodismutans
NCBI taxonomy Id: 1653476
Other names: C. thiodismutans, Caldimicrobium thiodismutans Kojima et al. 2016, DSM 29380, NBRC 110713, Thermodesulfobacteriaceae bacterium TF1, strain TF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.