STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THC_1530Cytochrome C. (307 aa)    
Predicted Functional Partners:
THC_1376
Cytochrome C; Belongs to the cytochrome c-552 family.
  
 
 0.701
THC_1529
Hypothetical protein.
  
    0.558
THC_0741
Hypothetical protein.
  
 
 0.514
THC_1531
FeS cluster assembly scaffold IscU.
       0.494
THC_1532
FeS cluster assembly scaffold IscU.
       0.494
THC_1533
Cysteine desulfurase.
       0.453
THC_1534
SirA family protein; Belongs to the sulfur carrier protein TusA family.
       0.453
THC_0474
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.406
THC_0921
Thiosulfate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.406
THC_1375
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.406
Your Current Organism:
Caldimicrobium thiodismutans
NCBI taxonomy Id: 1653476
Other names: C. thiodismutans, Caldimicrobium thiodismutans Kojima et al. 2016, DSM 29380, NBRC 110713, Thermodesulfobacteriaceae bacterium TF1, strain TF1
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