Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMY19225.1 | AMY19231.1 | A3Q40_01841 | A3Q40_01847 | Hypothetical protein. | Hypothetical protein. | 0.763 |
AMY19225.1 | act | A3Q40_01841 | A3Q40_01838 | Hypothetical protein. | Methanol dehydrogenase activator. | 0.786 |
AMY19225.1 | lytR_1 | A3Q40_01841 | A3Q40_02040 | Hypothetical protein. | Transcriptional regulator LytR. | 0.622 |
AMY19225.1 | mctB | A3Q40_01841 | A3Q40_01840 | Hypothetical protein. | Copper transporter MctB. | 0.993 |
AMY19225.1 | ppnK | A3Q40_01841 | A3Q40_01843 | Hypothetical protein. | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.804 |
AMY19225.1 | pyrG | A3Q40_01841 | A3Q40_01839 | Hypothetical protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.688 |
AMY19225.1 | recN | A3Q40_01841 | A3Q40_01842 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.804 |
AMY19225.1 | tlyA | A3Q40_01841 | A3Q40_01844 | Hypothetical protein. | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | 0.804 |
AMY19225.1 | xerD | A3Q40_01841 | A3Q40_01837 | Hypothetical protein. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.655 |
AMY19225.1 | yutF | A3Q40_01841 | A3Q40_01846 | Hypothetical protein. | Putative hydrolase YutF. | 0.763 |
AMY19231.1 | AMY19225.1 | A3Q40_01847 | A3Q40_01841 | Hypothetical protein. | Hypothetical protein. | 0.763 |
AMY19231.1 | act | A3Q40_01847 | A3Q40_01838 | Hypothetical protein. | Methanol dehydrogenase activator. | 0.568 |
AMY19231.1 | mctB | A3Q40_01847 | A3Q40_01840 | Hypothetical protein. | Copper transporter MctB. | 0.763 |
AMY19231.1 | ppnK | A3Q40_01847 | A3Q40_01843 | Hypothetical protein. | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.932 |
AMY19231.1 | pyrG | A3Q40_01847 | A3Q40_01839 | Hypothetical protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.498 |
AMY19231.1 | recN | A3Q40_01847 | A3Q40_01842 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.913 |
AMY19231.1 | tlyA | A3Q40_01847 | A3Q40_01844 | Hypothetical protein. | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. | 0.859 |
AMY19231.1 | xerD | A3Q40_01847 | A3Q40_01837 | Hypothetical protein. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.430 |
AMY19231.1 | yutF | A3Q40_01847 | A3Q40_01846 | Hypothetical protein. | Putative hydrolase YutF. | 0.994 |
act | AMY19225.1 | A3Q40_01838 | A3Q40_01841 | Methanol dehydrogenase activator. | Hypothetical protein. | 0.786 |
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