CRK58817.1 protein (Alloactinosynnema sp. L07)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRK58817.1

Hypothetical protein. (170 aa)

Predicted Functional Partners:

gene:80947689

0.629

gene:80947691

0.539

CRK58819.1

0.508

Your Current Organism:

Alloactinosynnema sp. L07

NCBI taxonomy Id: 1653480
Other names: A. sp. L-07, Alloactinosynnema sp. L-07

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRK58817.1	CRK58819.1	gene:80947690	gene:80947692	Hypothetical protein.	ABC transporter permease protein.	0.508
CRK58817.1	gene:80947689	gene:80947690	gene:80947689	Hypothetical protein.	Uncharacterized protein.	0.629
CRK58817.1	gene:80947691	gene:80947690	gene:80947691	Hypothetical protein.	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	0.539
CRK58819.1	CRK58817.1	gene:80947692	gene:80947690	ABC transporter permease protein.	Hypothetical protein.	0.508
CRK58819.1	gene:80947689	gene:80947692	gene:80947689	ABC transporter permease protein.	Uncharacterized protein.	0.419
CRK58819.1	gene:80947691	gene:80947692	gene:80947691	ABC transporter permease protein.	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	0.967
gene:80947689	CRK58817.1	gene:80947689	gene:80947690	Uncharacterized protein.	Hypothetical protein.	0.629
gene:80947689	CRK58819.1	gene:80947689	gene:80947692	Uncharacterized protein.	ABC transporter permease protein.	0.419
gene:80947689	gene:80947691	gene:80947689	gene:80947691	Uncharacterized protein.	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	0.442
gene:80947691	CRK58817.1	gene:80947691	gene:80947690	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	Hypothetical protein.	0.539
gene:80947691	CRK58819.1	gene:80947691	gene:80947692	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	ABC transporter permease protein.	0.967
gene:80947691	gene:80947689	gene:80947691	gene:80947689	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER.	Uncharacterized protein.	0.442