STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRK58951.11-deoxy-D-xylulose 5-phosphate synthase. (532 aa)    
Predicted Functional Partners:
gene:80947825
Mobile element protein.
 
     0.591
CRK58949.1
Mobile element protein.
       0.525
CRK55699.1
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins.
  
  
 0.515
gene:80945068
NLP/P60 family protein.
  
  
 0.492
gene:80947513
FhuF_C domain-containing protein.
  
    0.453
CRK61148.1
Iron-sulfur protein.
  
    0.453
Your Current Organism:
Alloactinosynnema sp. L07
NCBI taxonomy Id: 1653480
Other names: A. sp. L-07, Alloactinosynnema sp. L-07
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