STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001238275_05403Unannotated protein. (408 aa)    
Predicted Functional Partners:
GCA_001238275_05409
Unannotated protein.
 
 
  0.950
GCA_001238275_05408
Unannotated protein.
 
  0.948
GCA_001238275_03052
Unannotated protein.
 
 
 0.946
GCA_001238275_00252
Unannotated protein.
 
 
 0.862
GCA_001238275_05402
Unannotated protein.
 
  
 
0.836
GCA_001238275_05412
Unannotated protein.
 
 
  0.810
GCA_001238275_03051
Unannotated protein.
 
 
  0.757
GCA_001238275_03879
Unannotated protein.
 
 
  0.755
GCA_001238275_05396
Unannotated protein.
  
  
 
0.744
GCA_001238275_05405
Unannotated protein.
 
  
 
0.740
Your Current Organism:
Bradyrhizobium viridifuturi
NCBI taxonomy Id: 1654716
Other names: B. viridifuturi, Bradyrhizobium sp. CMVU02, Bradyrhizobium sp. CMVU30, Bradyrhizobium sp. SEMIA 6387, Bradyrhizobium sp. SEMIA 6428, Bradyrhizobium sp. SEMIA 690, Bradyrhizobium viridifuturi Helene et al. 2015, C 100a, CNPSo 991, LMG 28866, LMG:28866, strain SEMIA 690
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.