STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLO88786.1Growth inhibitor PemK; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
OLO91413.1
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.680
OLO91285.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.680
OLO90751.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.680
OLO89569.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.680
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.601
OLO91374.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
OLO89399.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
OLO88787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
OLO89472.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.468
OLO91058.1
ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.464
Your Current Organism:
Actinomyces naeslundii
NCBI taxonomy Id: 1655
Other names: A. naeslundii, ATCC 12104, CCUG 18310, CCUG 2238, CCUG 32832, CCUG 35333, CDC W826, CIP 103128, DSM 43013, JCM 8349, NCTC 10301
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