STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO94074.1Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
KRO94602.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.931
ABS10_06195
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
KRO94914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.885
KRO94772.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.874
KRO94603.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.860
KRO94913.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.854
KRO94458.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.839
ABS10_01600
Type II/IV secretion system protein; Metagenomic; derived from metagenome: marine metagenome.
 
 0.793
KRO94771.1
Type II/IV secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.785
KRO94770.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.683
Your Current Organism:
SAR86 cluster bacterium BACL1
NCBI taxonomy Id: 1655612
Other names: S. cluster bacterium BACL1 MAG-120820-bin45, SAR86 cluster bacterium BACL1 MAG-120820-bin45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.