STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001282725_00495Unannotated protein. (344 aa)    
Predicted Functional Partners:
GCA_001282725_01694
Unannotated protein.
 
     0.642
GCA_001282725_00493
Unannotated protein.
       0.641
GCA_001282725_00494
Unannotated protein.
       0.596
GCA_001282725_01526
Unannotated protein.
  
     0.593
GCA_001282725_00489
Unannotated protein.
       0.585
GCA_001282725_00490
Unannotated protein.
       0.547
GCA_001282725_00491
Unannotated protein.
       0.545
GCA_001282725_00492
Unannotated protein.
       0.545
GCA_001282725_01216
Unannotated protein.
  
    0.505
GCA_001282725_02991
Unannotated protein.
  
    0.493
Your Current Organism:
Inediibacterium massiliense
NCBI taxonomy Id: 1658111
Other names: CSUR P1907, Clostridiaceae bacterium mt12, DSM 100590, I. massiliense, strain Mt12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.