STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSND_62052Putative Aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (384 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.934
pheA
P-protein (Includes: Chorismate mutase; Prephenate dehydratase).
 
 
 0.899
putA
Bifunctional protein PutA; Belongs to the aldehyde dehydrogenase family.
   
 0.893
aclA
ATP citrate lyase, alpha subunit.
 
 
 0.850
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 0.844
metH
homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.833
gcvP
Glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.827
NSND_50765
Putative FAD/FMN-containing dehydrogenase, glycolate oxidase, fused subunits GlcD and GlcF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.823
NSND_62216
Putative Formimidoyltransferase-cyclodeaminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
  0.814
NSND_60107
FAD dependent oxidoreductase.
  
 
 0.809
Your Current Organism:
Nitrospira sp. ND1
NCBI taxonomy Id: 1658518
Other names: N. sp. ND1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.