STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANI58558.1XRE family transcriptional regulator; Pfam: Domain of unknown function (DUF955); SMART: Helix-turn-helix XRE-family like proteins; Pfam: Helix-turn-helix domain. (378 aa)    
Predicted Functional Partners:
ANI60489.1
ATP-dependent exonuclease.
    
  0.459
ANI60571.1
Pfam: UvrD/REP helicase N-terminal domain; Pfam: UvrD-like helicase C-terminal domain.
    
  0.459
rep
ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
    
  0.459
ANI63368.1
Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain.
    
  0.459
Your Current Organism:
Pseudomonas sp. GR 602
NCBI taxonomy Id: 1659194
Other names: P. sp. GR 6-02, Pseudomonas sp. GR 6-02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.