STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KSW10402.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (922 aa)    
Predicted Functional Partners:
pafB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.826
lnt
Acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
       0.813
pafC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
KSW10404.1
Polyprenol monophosphomannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.751
KSW10399.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
mpa
Proteasome ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.608
typA
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.596
ssuC
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.595
whiB-4
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.551
SecG
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.542
Your Current Organism:
Schaalia odontolytica
NCBI taxonomy Id: 1660
Other names: ATCC 17929, BCCM/LMG:18080, CCUG 20536, CIP 101124, DSM 19120, DSM 43760, JCM 14871, LMG 18080, LMG:18080, NCTC 9935, S. odontolytica
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