Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KSW10630.1 | KSW10947.1 | APY09_09035 | APY09_05590 | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.445 |
| KSW10630.1 | lexA | APY09_09035 | APY09_09045 | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.694 |
| KSW10630.1 | nrdR | APY09_09035 | APY09_09030 | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.710 |
| KSW10630.1 | psaB_3 | APY09_09035 | APY09_03835 | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.428 |
| KSW10947.1 | KSW10630.1 | APY09_05590 | APY09_09035 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.445 |
| KSW10947.1 | psaB_3 | APY09_05590 | APY09_03835 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.441 |
| lexA | KSW10630.1 | APY09_09045 | APY09_09035 | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.694 |
| lexA | nrdR | APY09_09045 | APY09_09030 | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.661 |
| nrdR | KSW10630.1 | APY09_09030 | APY09_09035 | Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.710 |
| nrdR | lexA | APY09_09030 | APY09_09045 | Transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.661 |
| psaB_3 | KSW10630.1 | APY09_03835 | APY09_09035 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.428 |
| psaB_3 | KSW10947.1 | APY09_03835 | APY09_05590 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.441 |