STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS57946.1Glucose-methanol-choline oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)    
Predicted Functional Partners:
ODS51688.1
Cytochrome-c oxidase, cbb3-type subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 0.937
ODS58849.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.925
ODS52749.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.879
ODS58876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.878
ODS52533.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.878
ODS54378.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.875
ODS58829.1
Hybrid-cluster NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.739
ODS57945.1
Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.734
ODS57170.1
Pyruvate dehydrogenase complex E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.682
ODS56954.1
Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.603
Your Current Organism:
Agrobacterium sp. SCN6119
NCBI taxonomy Id: 1660088
Other names: A. sp. SCN 61-19, Agrobacterium sp. SCN 61-19
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