STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS56708.1Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)    
Predicted Functional Partners:
ODS58829.1
Hybrid-cluster NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.866
ODS56707.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
ABS40_20965
Hypothetical protein; Metagenomic; derived from metagenome: bioreactor metagenome.
    
  0.758
ODS56706.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
ODS55232.1
Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.560
ODS56709.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
Your Current Organism:
Agrobacterium sp. SCN6119
NCBI taxonomy Id: 1660088
Other names: A. sp. SCN 61-19, Agrobacterium sp. SCN 61-19
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