STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS94622.1Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
ABS49_11630
Conjugal transfer protein TrbG; Type IV secretion system VirB9/CagX family; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.979
ODS94623.1
Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
ODS94621.1
Conjugal transfer protein TrbE; Type IV secretion system ATPase VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.967
ODS94624.1
P-type conjugative transfer ATPase TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.947
ODS96600.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.894
ODS94989.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.736
ODS94625.1
Transcriptional regulator; TrbA repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.698
ODS96601.1
P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.514
ODS94990.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.425
Your Current Organism:
Erythrobacter sp. SCN6214
NCBI taxonomy Id: 1660099
Other names: E. sp. SCN 62-14, Erythrobacter sp. SCN 62-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.