ODS96158.1 protein (Lautropia sp. SCN6989) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ODS96158.1

Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)

Predicted Functional Partners:

ODS96157.1

0.954

ODS94549.1

0.821

ODS99153.1

0.806

ODS99159.1

0.760

ABS56_00755

0.480

ODS96159.1

0.419

Your Current Organism:

Lautropia sp. SCN6989

NCBI taxonomy Id: 1660104
Other names: L. sp. SCN 69-89, Lautropia sp. SCN 69-89

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABS56_00755	ODS94549.1	ABS56_00755	ABS56_17640	Cytochrome; Required for the transposition of the insertion element.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
ABS56_00755	ODS96157.1	ABS56_00755	ABS56_14330	Cytochrome; Required for the transposition of the insertion element.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ABS56_00755	ODS96158.1	ABS56_00755	ABS56_14335	Cytochrome; Required for the transposition of the insertion element.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
ABS56_00755	ODS99153.1	ABS56_00755	ABS56_02190	Cytochrome; Required for the transposition of the insertion element.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ODS94549.1	ABS56_00755	ABS56_17640	ABS56_00755	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Required for the transposition of the insertion element.	0.568
ODS94549.1	ODS96158.1	ABS56_17640	ABS56_14335	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
ODS94549.1	ODS99159.1	ABS56_17640	ABS56_02185	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
ODS96157.1	ABS56_00755	ABS56_14330	ABS56_00755	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Required for the transposition of the insertion element.	0.527
ODS96157.1	ODS96158.1	ABS56_14330	ABS56_14335	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
ODS96157.1	ODS96159.1	ABS56_14330	ABS56_14340	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
ODS96157.1	ODS99159.1	ABS56_14330	ABS56_02185	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
ODS96158.1	ABS56_00755	ABS56_14335	ABS56_00755	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Required for the transposition of the insertion element.	0.480
ODS96158.1	ODS94549.1	ABS56_14335	ABS56_17640	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
ODS96158.1	ODS96157.1	ABS56_14335	ABS56_14330	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
ODS96158.1	ODS96159.1	ABS56_14335	ABS56_14340	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.419
ODS96158.1	ODS99153.1	ABS56_14335	ABS56_02190	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
ODS96158.1	ODS99159.1	ABS56_14335	ABS56_02185	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ODS96159.1	ODS96157.1	ABS56_14340	ABS56_14330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ODS96159.1	ODS96158.1	ABS56_14340	ABS56_14335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ODS99153.1	ABS56_00755	ABS56_02190	ABS56_00755	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Required for the transposition of the insertion element.	0.528