STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS78_15640tRNA-His; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)    
Predicted Functional Partners:
ODT86754.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.965
ODT86443.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.965
ODT86545.1
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.951
ODT86544.1
Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
ODT88913.1
Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.792
ODT89268.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.761
ODT85798.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.757
ODT89267.1
Protein TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.749
ODT88914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.749
ODT86578.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.746
Your Current Organism:
Phenylobacterium sp. SCN7031
NCBI taxonomy Id: 1660129
Other names: P. sp. SCN 70-31, Phenylobacterium sp. SCN 70-31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.