STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODU22172.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
ODU21929.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
   
 0.789
ODU21476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
ODU22458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.576
ODU18900.1
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.528
ODU19812.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.491
ODU22120.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.476
ODU18833.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.408
Your Current Organism:
Sphingomonas sp. SCN6718
NCBI taxonomy Id: 1660141
Other names: S. sp. SCN 67-18, Sphingomonas sp. SCN 67-18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.