STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS87125.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (946 aa)    
Predicted Functional Partners:
ODS82392.1
Bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.922
ODS86982.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.684
ODS85880.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.670
ODS73445.1
Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
    
 0.664
ODS82680.1
Glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.661
ODS84151.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.643
ODS80477.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.643
ODS75114.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.643
ODS73447.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.643
ODS78959.1
D-arabinose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily.
    
  0.636
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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