STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS82437.1Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
ODS82438.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.948
ODS82436.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.889
ODS82434.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.848
ODS82435.1
DUF4432 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.844
ODS81883.1
Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.799
ODS80257.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.761
ODS80261.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.756
ODS80258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.744
ODS80953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
ODS84008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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