STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS80269.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
ODS81397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
ODS82077.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.753
ODS82341.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
ABS46_01665
Phosphoglycerate mutase (2,3-diphosphoglycerate-independent); Metagenomic; derived from metagenome: bioreactor metagenome.
  
     0.717
ODS86107.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.704
ODS80819.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
ODS86991.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
ODS81984.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.655
ODS83633.1
Secreted glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
ODS81714.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.626
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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