STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS78869.1SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1157 aa)    
Predicted Functional Partners:
ODS78868.1
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.946
ODS86180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ABS46_02135
Hypothetical protein; Metagenomic; derived from metagenome: bioreactor metagenome.
 
     0.774
ODS84627.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ODS84277.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
ODS82691.1
Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
ODS81439.1
Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.774
ODS84378.1
Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
ODS79506.1
Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
ODS77902.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.770
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.