ODS75119.1 protein (Cytophagaceae bacterium SCN5212)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ODS75119.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)

Predicted Functional Partners:

ODS82685.1

0.959

ODS83286.1

0.637

ODS81960.1

0.637

ABS46_13785

0.637

ODS80525.1

0.637

ODS73768.1

0.637

ODS80664.1

0.603

ODS79257.1

0.562

ODS81926.1

0.455

ODS75118.1

0.446

Your Current Organism:

Cytophagaceae bacterium SCN5212

NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABS46_13785	ODS73768.1	ABS46_13785	ABS46_19845	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ABS46_13785	ODS75119.1	ABS46_13785	ABS46_19395	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ABS46_13785	ODS80664.1	ABS46_13785	ABS46_13610	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
ABS46_13785	ODS81926.1	ABS46_13785	ABS46_10355	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
ABS46_13785	ODS82685.1	ABS46_13785	ABS46_08190	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ODS73768.1	ABS46_13785	ABS46_19845	ABS46_13785	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ODS73768.1	ODS75119.1	ABS46_19845	ABS46_19395	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ODS73768.1	ODS80664.1	ABS46_19845	ABS46_13610	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
ODS73768.1	ODS81926.1	ABS46_19845	ABS46_10355	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
ODS75118.1	ODS75119.1	ABS46_19390	ABS46_19395	Acetylxylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
ODS75119.1	ABS46_13785	ABS46_19395	ABS46_13785	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ODS75119.1	ODS73768.1	ABS46_19395	ABS46_19845	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ODS75119.1	ODS75118.1	ABS46_19395	ABS46_19390	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylxylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
ODS75119.1	ODS79257.1	ABS46_19395	ABS46_16075	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
ODS75119.1	ODS80525.1	ABS46_19395	ABS46_13935	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ODS75119.1	ODS80664.1	ABS46_19395	ABS46_13610	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
ODS75119.1	ODS81926.1	ABS46_19395	ABS46_10355	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.455
ODS75119.1	ODS81960.1	ABS46_19395	ABS46_10115	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ODS75119.1	ODS82685.1	ABS46_19395	ABS46_08190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
ODS75119.1	ODS83286.1	ABS46_19395	ABS46_06765	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637