STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS73534.1Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)    
Predicted Functional Partners:
ODS73533.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.846
ODS73526.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.795
ODS73527.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.774
ABS46_08685
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 
0.763
ODS73525.1
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
ODS73524.1
SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
ODS80684.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.583
ODS78705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.580
ODS80183.1
Sulfatase-modifying factor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.477
ODS73612.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.466
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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