STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS73445.1Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (714 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
0.996
ODS73446.1
Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.982
ODS86670.1
Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.970
ODS83294.1
Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.954
ODS75114.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.942
ODS80477.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.941
ODS81980.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.897
ODS73447.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.854
ODS86982.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.778
ODS82392.1
Bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.768
Your Current Organism:
Cytophagaceae bacterium SCN5212
NCBI taxonomy Id: 1660162
Other names: C. bacterium SCN 52-12, Cytophagaceae bacterium SCN 52-12
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