STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODT05091.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (224 aa)    
Predicted Functional Partners:
ODT05130.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.910
ODT05090.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.884
ODT04002.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.877
ODT04003.1
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family.
 
   
 0.768
ODT03318.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.752
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.750
ODT05264.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
ODT03067.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.739
ODT03334.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
ODT05412.1
Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.701
Your Current Organism:
Gemmatimonadetes bacterium SCN7022
NCBI taxonomy Id: 1660163
Other names: G. bacterium SCN 70-22, Gemmatimonadetes bacterium SCN 70-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.