STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODT03315.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1106 aa)    
Predicted Functional Partners:
ODT04869.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.704
ODT03618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.691
ODT04861.1
TIGR02688 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.671
ODT04404.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.623
ODT03575.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.616
ODT02043.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.582
ODT03577.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.475
ABS52_00135
Hypothetical protein; Metagenomic; derived from metagenome: bioreactor metagenome.
 
    0.474
ODT03313.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.406
ODT03314.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.406
Your Current Organism:
Gemmatimonadetes bacterium SCN7022
NCBI taxonomy Id: 1660163
Other names: G. bacterium SCN 70-22, Gemmatimonadetes bacterium SCN 70-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.