STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHU90072.1HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HAD-like hydrolase superfamily. (285 aa)    
Predicted Functional Partners:
AHU90074.1
3-dehydroquinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.868
AHU90071.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
araB_2
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.715
AHU90075.1
Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulokinase family.
 
  
 0.564
AHU90611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.527
ulaF
Ribulose 5-phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.449
AHU88788.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.429
AHU90077.1
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.425
Your Current Organism:
Trueperella pyogenes
NCBI taxonomy Id: 1661
Other names: ATCC 19411, Actinomyces pyogenes, Arcanibacterium pyogenes, Arcanobacterium pyogenes, Bacillus pyogenes, CCUG 13230, CIP 103129, Corynebacterium pyogenes, DSM 20630, LMG 16162, LMG:16162, NCTC 5224, T. pyogenes, strain C-100
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