STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDFB_003060Poly(A)-specific ribonuclease PARN. (571 aa)    
Predicted Functional Partners:
BDFB_010774
M7GpppN-mRNA hydrolase.
     
 0.712
BDFB_000880
Far upstream element-binding protein 1.
    
 0.562
BDFB_013839
RNase PH domain containing protein.
     
 0.508
BDFB_006213
KH_dom_type_1 domain-containing protein.
     
 0.498
BDFB_005236
RNase PH domain containing protein.
     
 0.497
BDFB_004771
Exosome complex component RRP42.
     
 0.496
BDFB_010837
Eukaryotic translation initiation factor 4E-1A; Belongs to the eukaryotic initiation factor 4E family.
     
 0.483
BDFB_010752
RNase PH domain containing protein.
   
 
 0.463
BDFB_002348
Exosome complex component RRP4.
     
 0.463
BDFB_002425
Cytoplasmic polyadenylation element-binding protein 1.
    
 
 0.462
Your Current Organism:
Asbolus verrucosus
NCBI taxonomy Id: 1661398
Other names: A. verrucosus, Cryptoglossa verrucosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.