STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDFB_003147CXXC-type zinc finger protein 1. (502 aa)    
Predicted Functional Partners:
BDFB_008347
Retinoblastoma-binding protein 5.
    
 0.996
BDFB_006086
Set1/Ash2 histone methyltransferase complex subunit ASH2.
   
 0.996
BDFB_002153
WD repeat-containing protein 82.
    
 0.982
BDFB_001705
Dpy-30 domain containing protein.
    
 
 0.973
BDFB_012594
WD repeat-containing protein 5.
    
 
 0.900
BDFB_011961
N-SET and/or YppG domain containing protein.
   
 
 0.887
BDFB_007444
RRM 1 domain containing protein.
   
 
 0.887
BDFB_011432
SET and/or N-SET domain containing protein.
   
 
 0.887
BDFB_003042
WD repeat-containing protein 16.
    
 
 0.865
BDFB_013408
WD40 domain containing protein.
    
 
 0.865
Your Current Organism:
Asbolus verrucosus
NCBI taxonomy Id: 1661398
Other names: A. verrucosus, Cryptoglossa verrucosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.