STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDFB_000929ATP-dependent RNA helicase spindle-E. (1425 aa)    
Predicted Functional Partners:
BDFB_001205
Calcium homeostasis endoplasmic reticulum protein.
   
 0.912
BDFB_005913
RhoGEF and/or C2 domain containing protein.
    
  0.826
BDFB_004784
Aubergine; Belongs to the argonaute family.
   
 0.797
BDFB_006332
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.782
BDFB_002981
DEAD and/or Helicase C domain containing protein; Belongs to the DEAD box helicase family.
    
 0.770
BDFB_009672
ATP-dependent RNA helicase p62; Belongs to the DEAD box helicase family.
    
 0.770
BDFB_012649
Argonaute-3.
   
 0.754
BDFB_002864
AP complex subunit beta.
    
 0.723
BDFB_010155
U3 small nucleolar RNA-associated protein 14 A.
   
 0.722
BDFB_001368
RING finger protein 17.
   
 0.692
Your Current Organism:
Asbolus verrucosus
NCBI taxonomy Id: 1661398
Other names: A. verrucosus, Cryptoglossa verrucosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.